SCIRun
SCIRun is a Problem Solving Environment (PSE), for modeling, simulation and visualization of scientific problems. It is available for free and open source. [SCIRun License] (SCIRun 3.0 for Windows, Linux, and Mac OSX now available.)

BioPSE
BioPSE is a superset of SCIRun, adding capabilities for investigating biomedical problems. [BioPSE License] (BioPSE 3.0 for Windows, Linux, and Mac OSX now available.)

BioTensor
BioFEM
BioImage
These are examples of Power Apps; expansion packages for SCIRun and BioPSE that extend the capabilities of SCIRun and BioPSE for specific applications. They are included automatically when you download BioPSE. (PowerApps 3.0 for Windows, Linux, and Mac OSX now available.)

Seg3D
Seg3D is an open source interactive segmentation tool that mixes powerful ITK and NRRD based volumetric image analysis and segmentation tools, interactive painting, and advanced volume rendering. [Seg3D License] (Seg3D v1.8.2 now available)

VisTrails
VisTrails is a new scientific workflow management system developed at the University of Utah that provides support for data exploration and visualization.

FEBio
FEBio is a software tool that uses the finite element method for solving nonlinear large deformation problems in solid biomechanics. It is specifically aimed at solving problems in the field of biomechanics, by providing appropriate modeling scenarios, constitutive models and boundary conditions.

PreView is a Finite Element (FE) preprocessor that has been designed specifically to set up FE problems for FEBio. It allows the user to specify the boundary conditions and material properties in a user-friendly graphical environment.

PostView is a Finite Element (FE) post-processor that is designed to post-process the results from FEBio. It offers the user a graphical user interface to visualize and analyze the FE model.

Fusion
Fusion is an extension package for SCIRun which expands it's capabilities for modeling fusion plasma field problems. FusionViewer is included with Fusion. [Fusion License]

map3d
map3d is a scientific visualization application written to display and edit complex, three-dimensional geometric models and scalar, time-based data associated with those models. [map3d License] (Linux, Mac OSX, SGI, Windows)

NCRR CIBC Dataset Archive
The NCRR CIBC Dataset Archive is a free collection of datasets that can be used with our software.

CT Data Archive
The CT Dataset Archive is a free collection of datasets that can be used with our software. The data is in .vff format with NRRD header files avalable for use with Teem or compatible software.

Vispack

VISPACK is a C++ library that includes matrix, image, and volume objects. The library has functionality that makes it suitable for surface reconstruction work using the level sets method.

Teem
Teem is a collection of libraries written by Gordon Kindlmann (in C) in support of his research. It includes his implementation of his Master's Thesis work. Teem is now distributed through SorceForge.

Afront
Afront is a tool for meshing and remeshing surfaces. The main application of Afront is the generation of high-quality meshes from a variety of surface descriptions, from triangle meshes themselves (remeshing) to implicit surfaces to point set surfaces. Afront is distributed through SorceForge.